Manish Kumar

Contact me : manish@manish.info

Follow me on GitHub

About Me

I am passionate Bioinformatics programmer having more than 3.5 years of experience in developing softwares for analyzing, visualizing and integrating Biomedical/Healthcare data.

Technical Skills

Scripting and Programming languages

  • Java, Perl, Python, R, bash.

Web Technologies and Frameworks

  • Spring MVC framework, Groovy and Grails, HTML, CSS, JavaScript, AJAX, JQery, REST API, SOAP API, Apache Web Server, Apache Tomcat, JBoss.

Software Testing

  • Manual Testing, JUnit, Selenium.

Software/tools

  • Clinical/Healthcare data management tools: OpenClinica, ClinCapture, Mirth, OpenSpecimen.
  • Machine Learning: Weka, LibSVM, Mallet.
  • OS: Windows, Windows Server, Linux.
  • IDE: Eclipse, Spring Tool Suite, RStudio, Netbeans.
  • Version Tracking: GitHub, Bamboo.
  • Project Management/ Bug Tracking: Confluence, Jira.

Projects

Text Mining/Data Mining

Clinical Data Management

Web application development

Shared tasks/Challenges

Publications

  • Kumar, M., Ghosh, S., Valadi, J., & Siarry, P. (2013). Simultaneous Gene Selection and Cancer Classification Using a Hybrid Intelligent Water Drop Approach. In P. Maji, A. Ghosh, M. N. Murty, K. Ghosh & S. Pal (Eds.), Pattern Recognition and Machine Intelligence (Vol. 8251, pp. 641-646): Springer Berlin Heidelberg.

  • Kumar, M., Jayaraman, S., Bhat, S., Ghosh, S., & Jayaraman, V. K. (2014). Variable Selection and Fault Detection Using a Hybrid Intelligent Water Drop Algorithm.In B. V. Babu, A. Nagar, K. Deep, M. Pant, J. C. Bansal, K. Ray & U. Gupta (Eds.), Proceedings of the Second International Conference on Soft Computing for Problem Solving (SocProS 2012), December 28-30, 2012 (Vol. 236, pp. 225-231): Springer India.

  • Jonnagaddala, J., Liaw, S.-T., Ray, P., Kumar, M., Chang, N.-W., & Dai, H.-J. Coronary artery disease risk assessment from unstructured electronic health records using text mining. Journal of Biomedical Informatics. doi: http://dx.doi.org/10.1016/j.jbi.2015.08.003

  • Jonnagaddala, J., Liaw, S.-T., Ray, P., Kumar, M., Dai, H.-J., & Hsu, C.-Y. (2015). Identification and Progression of Heart Disease Risk Factors in Diabetic Patients from Longitudinal Electronic Health Records. BioMed Research International, 2015, 10. doi: 10.1155/2015/636371

  • Jonnagaddala, J., Liaw, S.-T., Ray, P., Kumar, M., & Dai, H.-J. (2014). HTNSystem: Hypertension Information Extraction System for Unstructured Clinical Notes. In S.-M. Cheng & M.-Y. Day (Eds.), Technologies and Applications of Artificial Intelligence (Vol. 8916, pp. 219-227): Springer International Publishing.

  • Jonnagaddalaa, J., Liaw, S.-T., Rayb, P., Kumarc, M., & Dai, H.-J. (2015). TMUNSW: Identification of disorders and normalization to SNOMED-CT terminology in unstructured clinical notes.

Work Experiences

Translational Bioinformatics Officer, UNSW, Australia

Domain Analyst, Krishagni Solutions Pvt Ltd, Pune, India

Qualifications

Masters in Bioinformatics

Bachelors in Medical Biotechnology

Resume